Computer simulation captures a complete cell cycle

Deel

American researchers have succeeded in creating a computer simulation of the complete life cycle of a minimal cell. Using various algorithms and novel computational methods, they are able to determine the behaviour of every molecule in the digital cell, as the Americans report in Cell of 9 March. In this way they can simulate, among other things, DNA replication, protein translation, the formation of ribosomes, and cell division.


The digital cell is modelled on a modified bacterium, JCVI-syn3A. This bacterium contains just five hundred genes – barely enough to grow, divide, and carry out the basic functions of a cell. Whereas the original completes a cell division in just under two hours, the computer version takes around six days, owing to the large number of calculations involved.

Simulated cell in an early stage of cell division. Left: membrane in green, ribosomes in yellow and purple, chromosomes in red. Right: proteins in grey, RNA in orange, and in the centre a view through to the replicated chromosomes in blue. Credit: Zane Thornburg

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